mcp server
Claidex MCP
Biomedical failure intelligence platform for terminated trials and translational analysis.
Description as published by the maintainer. Source
- version 1.0.0
- archived
- translation
archived — The linked repository returns 404. It was deleted, renamed or made private. Dashed tags are derived by ZBS Index from the published description, not stated by the maintainer.
What this server can do
24 functions, named and described by the server itself. Parameter names are shown because they say more about what a function does than its name usually does.
claidex_capabilities- Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.
claidex_claim_risk_matrix(limit, query)- Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence. Required: query, limit.
claidex_health_snapshot- Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.
claidex_research_prompt(disease, objective, target_gene, risk_tolerance)- Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use. Required: objective, risk_tolerance.
claidex_tool_catalog(source, include_schemas)- Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools. Required: include_schemas, source.
consult_specialist_model(prompt, context, task_type)- Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis. Required: task_type, prompt.
fetch(id)- Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows. Required: id.
fetch_research_url(url, max_chars)- Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses. Required: url, max_chars.
get_claim_content(slug)- Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis. Required: slug.
query_chembl(drug_name)- Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms. Required: drug_name.
query_clinicaltrials(phase, query, status, max_results)- Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated. Required: query, status, phase, max_results.
query_failure_graph(target_gene)- Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs. Required: target_gene.
query_openfda(drug_name, max_results)- Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count. Required: drug_name, max_results.
query_opentargets(target_gene, disease_term)- Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair. Required: target_gene, disease_term.
query_package_registry(ecosystem, package_name)- Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling. Required: ecosystem, package_name.
rank_documents_by_embedding(query, top_k, documents)- Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages. Required: query, documents, top_k.
rerank_documents(query, top_n, documents)- Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters. Required: query, documents, top_n.
run_computation(variables, expression)- Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages. Required: expression, variables.
run_statistical_analysis(inputs, context, analysis_type)- Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula. Required: analysis_type, inputs.
search(limit, query)- Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows. Required: query, limit.
search_claims(limit, query, category, failure_archetype)- Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score. Required: query, category, failure_archetype, limit.
search_preprint_flags(query, severity)- Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title. Required: query, severity.
search_pubmed(query, max_results)- Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result. Required: query, max_results.
web_search(focus, query)- Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms. Required: query, focus.
Last successful function declaration observed on . Source: https://app.claidex.com/api/mcp. We list what the server declared; we do not call any of these functions.
Endpoint status observed on . Source: https://app.claidex.com/api/mcp.
Signals
These are separate measurements of different things. They are deliberately not combined into one score, because a popularity number that mixes website traffic with saves and stars cannot be checked or acted on.
| Signal | Value | What it measures | Window | Observed | Source |
|---|---|---|---|---|---|
| Package downloads | 35 downloads | Package downloads from the npm registry in this window. Includes continuous integration runs, mirrors and automated installs, so it overstates the number of human users. | 2026-07-30 to 2026-08-05 | npm | |
| Latest published version | 1.0.0 | Latest version string the maintainer published to the registry. | as of fetch | Model Context Protocol | |
| Registry record last updated | 2026-05-24 | When the registry record was last updated by its maintainer. | point in time | Model Context Protocol | |
| First listed in the MCP Registry | 2026-05-24 | Date this server was first published to the official MCP Registry. Not a usage or quality measure. | point in time | Model Context Protocol | |
| repository status | not_found | GitHub returned 404 for the repository the maintainer listed. The project was deleted, renamed or made private, so the listing points at nothing. | as of fetch | GitHub | |
| mcp tools declared | 24 tools | Number of functions the server itself declared when asked to list them. This is what the server offers an agent, not a measure of how well any of them work. | as of probe | app.claidex.com | |
| mcp endpoint status | ok | The server listed 24 functions when asked. | as of probe | app.claidex.com |
Where to get it
This record as data
Every field on this page, with its source and observation date, is in the catalog JSON. Fetch the whole kind at once instead of parsing this HTML.
GET /api/v1/entries/mcp_server.json