mcp server
ChatSpatial
Natural language-driven spatial transcriptomics analysis with 60+ methods via MCP
Description as published by the maintainer. Source
- version 1.2.10
- active
active — Most recent push to the repository was 2026-08-03.
Signals
These are separate measurements of different things. They are deliberately not combined into one score, because a popularity number that mixes website traffic with saves and stars cannot be checked or acted on.
| Signal | Value | What it measures | Window | Observed | Source |
|---|---|---|---|---|---|
| GitHub stars | 43 | Number of GitHub accounts that bookmarked this repository since it was created. It is a bookmark count, not installs, not active users and not quality. | cumulative, all time | GitHub | |
| Last commit | 2026-08-03 | Date of the most recent push to any branch. This is the strongest cheap indicator of whether the project is still maintained. | point in time | GitHub | |
| Open issues | 13 | Open issues plus open pull requests, as GitHub counts them together. A high number can mean an active project or an abandoned one. | as of fetch | GitHub | |
| Latest published version | 1.2.10 | Latest version string the maintainer published to the registry. | as of fetch | Model Context Protocol | |
| Registry record last updated | 2026-05-21 | When the registry record was last updated by its maintainer. | point in time | Model Context Protocol | |
| License | MIT | Licence GitHub detected in the repository. Detection can be wrong; the LICENSE file is authoritative. | as of fetch | GitHub | |
| First listed in the MCP Registry | 2026-05-21 | Date this server was first published to the official MCP Registry. Not a usage or quality measure. | point in time | Model Context Protocol | |
| repository status | active | The repository exists on GitHub and is not archived. This says nothing about how recently it was worked on. | as of fetch | GitHub |
Where to get it
Related, by what their authors tagged them
-
io.github.genecell/piaso-mcp
— last commit 2026-07-15, shares single-cell, spatial-transcriptomics
PIASO single-cell omics docs + live PIASOmarkerDB, for coding agents.
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-
io.github.berntpopp/genefoundry
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io.github.cyanheads/ensembl-mcp-server
— last commit 2026-07-09, shares bioinformatics, genomics
Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.
-
io.github.cyanheads/gnomad-genetics-mcp-server
— last commit 2026-07-30, shares bioinformatics, genomics
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
-
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-
com.knitli/codeweaver
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KIAgent
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Your mail, chats and documents indexed into a local SQLite corpus, served to AI clients over MCP.
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Pickle
— last commit 2026-08-05, shares llm-agent
Free, local MCP server that audits ClickUp, Slack & Teams for work that slipped through.
These share tags the maintainers applied themselves, such as single-cell, spatial-transcriptomics, machine-learning, pytorch. Common tags like "mcp" or "ai" are ignored for this: agreeing with six hundred other projects is not a similarity.
This is not a recommendation and not a test result. It is a map of what the authors said their work is about.
How the author describes it
Topics the maintainer set on GitHub: agentic-ai, bioinformatics, cell-communication, claude-desktop, computational-biology, deconvolution, genomics, llm-agent, machine-learning, mcp-server, model-context-protocol, python, pytorch, scanpy, single-cell, spatial-analysis, spatial-domains, spatial-transcriptomics, squidpy, visualization.
This record as data
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