mcp server

io.github.cyanheads/protein-mcp-server

MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.

Description as published by the maintainer. Source

version 1.0.3
active
retrieval
evaluation

active — Most recent push to the repository was 2026-07-30. Dashed tags are derived by ZBS Index from the published description, not stated by the maintainer.

Signals

These are separate measurements of different things. They are deliberately not combined into one score, because a popularity number that mixes website traffic with saves and stars cannot be checked or acted on.

Signal	Value	What it measures	Window	Observed	Source
GitHub stars	5	Number of GitHub accounts that bookmarked this repository since it was created. It is a bookmark count, not installs, not active users and not quality.	cumulative, all time	2026-08-06	GitHub
Last commit	2026-07-30	Date of the most recent push to any branch. This is the strongest cheap indicator of whether the project is still maintained.	point in time	2026-08-06	GitHub
Open issues	5	Open issues plus open pull requests, as GitHub counts them together. A high number can mean an active project or an abandoned one.	as of fetch	2026-08-06	GitHub
Latest published version	1.0.3	Latest version string the maintainer published to the registry.	as of fetch	2025-10-02	Model Context Protocol
Registry record last updated	2025-10-02	When the registry record was last updated by its maintainer.	point in time	2025-10-02	Model Context Protocol
License	Apache-2.0	Licence GitHub detected in the repository. Detection can be wrong; the LICENSE file is authoritative.	as of fetch	2026-08-06	GitHub
First listed in the MCP Registry	2025-10-02	Date this server was first published to the official MCP Registry. Not a usage or quality measure.	point in time	2025-10-02	Model Context Protocol
repository status	active	The repository exists on GitHub and is not archived. This says nothing about how recently it was worked on.	as of fetch	2026-08-06	GitHub

Where to get it

Related, by what their authors tagged them

io.github.cyanheads/uniprot-mcp-server — last commit 2026-07-30, shares bioinformatics, cyanheads, protein
Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.
io.github.cyanheads/chembl-mcp-server — last commit 2026-07-30, shares cyanheads, drug-discovery
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
com.covasyn/chemistry — last commit 2026-07-31, shares drug-discovery
Deterministic MCP for AI agents: drug discovery, ADMET, docking, LNPs, DoE, retrosynthesis, ICH M7
cmxflow — last commit 2026-07-11, shares drug-discovery
Composable, tunable cheminformatics workflows: library preparation, clustering, docking, and more.
io.github.cyanheads/brapi-mcp-server — last commit 2026-07-16, shares bioinformatics, cyanheads
Collaborative BrAPI v2.1 MCP workspace — studies, germplasm, genotypes across Breedbase, T3, more.
io.github.cyanheads/clinicaltrialsgov-mcp-server — last commit 2026-07-26, shares bioinformatics, cyanheads
Search ClinicalTrials.gov — find studies, retrieve results, match patients to eligible trials.
io.github.cyanheads/ensembl-mcp-server — last commit 2026-07-09, shares bioinformatics, cyanheads
Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.
io.github.cyanheads/gnomad-genetics-mcp-server — last commit 2026-07-30, shares bioinformatics, cyanheads
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
io.github.cyanheads/pubchem-mcp-server — last commit 2026-07-30, shares bioinformatics, cyanheads
Search PubChem compounds, properties, safety data, bioactivity, and cross-references.
io.github.cyanheads/pubmed-mcp-server — last commit 2026-07-30, shares bioinformatics, cyanheads
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms.

These share tags the maintainers applied themselves, such as bioinformatics, cyanheads, protein, uniprot. Common tags like "mcp" or "ai" are ignored for this: agreeing with six hundred other projects is not a similarity.

This is not a recommendation and not a test result. It is a map of what the authors said their work is about.

Also from cyanheads

io.github.cyanheads/anime-mcp-server — last commit 2026-07-30
Search anime/manga, franchise watch order, schedule, characters, rankings, studio filmography.
io.github.cyanheads/arxiv-mcp-server — last commit 2026-07-27
Search arXiv, fetch paper metadata, and read full-text content.
io.github.cyanheads/astronomy-mcp-server — last commit 2026-07-31
Offline observational astronomy: positions, rise/set, moon phases, eclipses, and seasons.
io.github.cyanheads/attack-surface-mcp-server — last commit 2026-07-30
Passive external attack-surface mapping: CT subdomains, DNS, TLS, HTTP posture, RDAP/WHOIS, Shodan.
io.github.cyanheads/aviation-weather-mcp-server — last commit 2026-07-30
Fetch METARs, TAFs, PIREPs, and SIGMETs/AIRMETs from the NWS Aviation Weather Center.
io.github.cyanheads/biorxiv-mcp-server — last commit 2026-07-11
Search and retrieve bioRxiv and medRxiv preprints — by DOI, date interval, or keyword — via MCP.
io.github.cyanheads/bls-labor-mcp-server — last commit 2026-07-17
Fetch US Bureau of Labor Statistics data — CPI, unemployment, wages, JOLTS, and more via MCP.
io.github.cyanheads/bls-mcp-server — last commit 2026-07-17
Fetch US Bureau of Labor Statistics data — CPI, unemployment, wages, JOLTS, and more via MCP.
io.github.cyanheads/bluesky-mcp-server — last commit 2026-07-31
Search posts, profiles, feeds, threads, and trending topics on Bluesky.
io.github.cyanheads/calculator-mcp-server — last commit 2026-07-02
Evaluate, simplify, and differentiate mathematical expressions.

How the author describes it

Topics the maintainer set on GitHub: ai-agent, alphafold, bioinformatics, bun, cyanheads, drug-discovery, foldseek, interpro, mcp, mcp-server, model-context-protocol, pdb, protein, protein-structure, rcsb, stdio, streamable-http, structural-biology, typescript, uniprot.

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