mcp server
BioCosm
Biotech intelligence for AI agents: drugs, targets, diagnostics, PoS estimates, and writeups.
Description as published by the maintainer. Source
- version 1.0.0
- active
active — Registry entry last updated 2026-06-17.
What this server can do
13 functions, named and described by the server itself. Parameter names are shown because they say more about what a function does than its name usually does.
find_by_phase(limit, phase, node_type)- List drugs/diagnostics at a specific clinical phase. Required: phase.
find_by_target(limit, target_gene)- Find all drugs that target a specific gene/protein. Required: target_gene.
find_related(limit, node_id, link_type)- Find nodes connected to a given node. Three relationship types are derived on-the-fly: - "drug_target": for a drug, the targets it hits (and vice versa for a target node, the drugs that hit it) - "same_company": drugs sharing a company with this node - "same_target_class": drugs with the same mechanism_class Required: node_id.
get_company_portfolio(company_name)- Get a company's full drug/diagnostic portfolio from BioCosm. Required: company_name.
get_coverage- Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero. An empty or absent field on a node means "not in BioCosm's data," never a true zero. BioCosm is AI-generated and may contain errors.
get_node(node_id)- Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs, mostly blockbusters, as annualized quarterly estimates; source links when present), probability-of- success predictions for pipeline drugs (with confidence intervals and contributing factors), structured clinical trial outcomes, external cross-references, and writeup availability. Empty fields mean "not in BioCosm's coverage," NOT zero or absent in reality. Required: node_id.
get_node_freshness(node_id)- Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score. Required: node_id.
get_pos_score(node_id)- Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version. Returns None for nodes without a PoS score (typically only late-stage pipeline drugs are scored). Required: node_id.
get_staleness_report(limit)- Get writeup staleness report: overall stats, top stale nodes, data source freshness.
get_stats- Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.
get_writeup(node_id)- Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score. Required: node_id.
list_by_therapeutic_area(area, limit)- List all nodes in a given therapeutic area. Required: area.
search_nodes(limit, query)- Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company. Results are ranked: exact name/brand matches first, then partial name matches, with a node-type prior (canonical drug/diagnostic nodes rank above gene-target nodes, which rank above ChEMBL salt-form duplicates). Nodes matched only via description/company/area rank last. Each result includes a `name` field for disambiguation. Required: query.
Last successful function declaration observed on . Source: https://biocosm-mcp.fly.dev/mcp. We list what the server declared; we do not call any of these functions.
Endpoint status observed on . Source: https://biocosm-mcp.fly.dev/mcp.
Signals
These are separate measurements of different things. They are deliberately not combined into one score, because a popularity number that mixes website traffic with saves and stars cannot be checked or acted on.
| Signal | Value | What it measures | Window | Observed | Source |
|---|---|---|---|---|---|
| Latest published version | 1.0.0 | Latest version string the maintainer published to the registry. | as of fetch | Model Context Protocol | |
| Registry record last updated | 2026-06-17 | When the registry record was last updated by its maintainer. | point in time | Model Context Protocol | |
| First listed in the MCP Registry | 2026-06-17 | Date this server was first published to the official MCP Registry. Not a usage or quality measure. | point in time | Model Context Protocol | |
| mcp tools declared | 13 tools | Number of functions the server itself declared when asked to list them. This is what the server offers an agent, not a measure of how well any of them work. | as of probe | biocosm-mcp.fly.dev | |
| mcp endpoint status | ok | The server listed 13 functions when asked. | as of probe | biocosm-mcp.fly.dev |
Where to get it
This record as data
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